NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0171657_1081044

Scaffold Ga0171657_1081044


Overview

Basic Information
Taxon OID3300013120 Open in IMG/M
Scaffold IDGa0171657_1081044 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2566
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075650Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0171657_10810445F075650AGGAGVTLENWVKLPVGKVVCMRFREYRVTSRQITDPMFGIPRTVESLVFLVSHVDGVEVDKTFSVVSEKLAQEFESYLEDGTYKNYEWCLVKDGVGFVPPRIAKRSRV*

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