Scaffold Ga0120347_1017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120347_1017

Scaffold Ga0120347_1017

Overview

Basic Information
Taxon OID	3300013968 Open in IMG/M
Scaffold ID	Ga0120347_1017 Open in IMG/M
Source Dataset Name	Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Freie University Berlin
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1511
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Source Dataset Sampling Location
Location Name	Germany: Berlin
Coordinates	Lat. (^o)	52.529611	Long. (^o)	13.401343	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057003	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120347_10172	F057003	N/A	MANFIDVSNLAYSGKEAQEIFAKDIYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESYIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTARTATTKTYLKVVDGWEKQLKASAQNIEVEAFTVDNIVSQVEALIMKGLEKASAEDVPTDGYKVFMNYSDVKVLEVALGKLSVGNSANQIFGNYSKNADGSINVYGFQIVPTMMSRNKAVFGPAKNLVLGYDTFDSHIEYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*

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