NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119807_1000899

Scaffold Ga0119807_1000899


Overview

Basic Information
Taxon OID3300014026 Open in IMG/M
Scaffold IDGa0119807_1000899 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S17-03-R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29512
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (45.83%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046431Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0119807_10008996F046431AGGAGMLKKVIQKGVKVILIMTMVLSMIIAYSNTIISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNVDEEVKVLNVYPVPTAVYNTPNVQVTYLDGSSEVIPKTALLKVWMEGRNSKRRWKYN*

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