Scaffold Ga0134418_1000939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134418_1000939

Scaffold Ga0134418_1000939

Overview

Basic Information
Taxon OID	3300014563 Open in IMG/M
Scaffold ID	Ga0134418_1000939 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS45_24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12617
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (47.06%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042737	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134418_100093912	F042737	AGGAG	MQLTAKSNEVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTNKGLVVREKEEVEGAEKPVAYAILTDAGKTFVPSDDAE*

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