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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014969 Open in IMG/M |
| Scaffold ID | Ga0157376_10000003 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 568634 |
| Total Scaffold Genes | 545 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 320 (58.72%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009712 | Metagenome | 314 | Y |
| F010845 | Metagenome / Metatranscriptome | 298 | Y |
| F038723 | Metagenome | 165 | Y |
| F064021 | Metagenome | 129 | Y |
| F105755 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157376_1000000310 | F010845 | N/A | MLLLMVACQKAEPLTAAKANQIIDSYRFAAEPIYAEVPQKVFWNPRFPKDEYDDRSLRTFDNLRNAGLVTVTGGPNADGAEYVAHVTPKGFPILGTAPSARGPVFRGLICYKTYDGLRNFERHPTEPTTGHGELVWHYTRPTALYPLFETKKNKPLDKPFVSLVSFYYKDHQYRFDVTVRKTDAQ* |
| Ga0157376_10000003176 | F064021 | AGG | MKNTLLAVSVAALTLAGCTSAMNTALPPGRMSDAGIIRPCHRDHRDAQVCGNAIFNQTVIAQIHTGQTLTDVRAIMRHEAERRTVDGSNESWGYITNYDDKVMTWIAFTDRKVSAVTQQPWVRD* |
| Ga0157376_10000003284 | F009712 | AGG | VSAIFGRLFQLIGMIILPIGLLTGLLKDNVNLEVRLLFIGGAIFLLGWLMAKKTA* |
| Ga0157376_10000003323 | F105755 | AGGAG | LIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHVDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD* |
| Ga0157376_10000003367 | F038723 | GAG | MSDQRFDMLSSSESGLTYVREKRGGVMRVLTESELADFNDPPPCPQCAEQFGCEHFNCAGEAMLSEDEIESVAPPQWIVFAKACGISREDLDRLKLIEEHEGEYRVAPGADMRTQEIVLLLNER* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |