NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186593_103868

Scaffold Ga0186593_103868


Overview

Basic Information
Taxon OID3300017014 Open in IMG/M
Scaffold IDGa0186593_103868 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)955
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameArabian Sea
CoordinatesLat. (o)14.449Long. (o)64.9997Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100300Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0186593_1038681F100300N/ARMPTALLLVLLSLLADADAFVHTRPCIRLSVTRPFHGAARPLSRAVVRLAEEGESLTDAFASFVNQGKKLKPGEGAAARTDVKGLPIGKGGDTRDTSLGAIRAALQNWEVLKDPRNWQAEEFGLVGALGLIAAAIVWGYFTYVSPPEAMPAGPSRAVMVREAKIAECNGDAACEQKAIESTEEAIQLQKDLERCLYSAFSGSEKRMCQMKYGGKSVLGFF
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