NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186465_114018

Scaffold Ga0186465_114018


Overview

Basic Information
Taxon OID3300017273 Open in IMG/M
Scaffold IDGa0186465_114018 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameEnglish Channel
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075672Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0186465_1140181F075672GAGMALPEKTATIDPDREWALGNPDYKAISWYSSADGRFEEKLARESPLDSFSGLNYNKIARGDNEYYGSTTAPLYAYEFDEDAYYREFQPVKSDEQVQTELNEPVEKFEAKLKEFVDKGEELVWTPAMEEMARGCPIAPARAIQYEISPYFQLNTDGYRKHWANTRLVEFRPMLRMQQKWMNTSSDFFFRFQIMRWNLSSKIRMRYWKMVASGVYFGLLIDHFWARQYKRKFKWH
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