Scaffold Ga0186465_116276

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186465_116276

Scaffold Ga0186465_116276

Overview

Basic Information
Taxon OID	3300017273 Open in IMG/M
Scaffold ID	Ga0186465_116276 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	871
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	English Channel
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054572	Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186465_1162761	F054572	AGGAG	MVRPEIFLTNTGIPNPLAKLDPRYHPLGQPGPRHRGPVWICKVPWGLRLPAFVLTYCFLAWNGRHFMFPHRARTVHNVELPIFTEREVRGEWWDRFCKHSDPFRFGHIYAKIQEDRIRKAKREGLLPENYPENEEQLNQMDPAVFEAMIPEIKKLKFVPGKDRCDGMVGYRGTMPKYHGIAEE

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