NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186610_117323

Scaffold Ga0186610_117323


Overview

Basic Information
Taxon OID3300017298 Open in IMG/M
Scaffold IDGa0186610_117323 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, 5 C, 35 psu salinity and 121 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0909)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)734
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-48.1Long. (o)-24.25Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044273Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0186610_1173231F044273N/AMVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDITAHTIDITEDGESAKIVCDLGPTHHNKKMNREVINELKKN
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