NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186626_1010193

Scaffold Ga0186626_1010193


Overview

Basic Information
Taxon OID3300017349 Open in IMG/M
Scaffold IDGa0186626_1010193 Open in IMG/M
Source Dataset NameMetatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in f/2 medium with seawater, 25 C, 36 psu salinity and 258 ?mol photons light - Karenia brevis Wilson (MMETSP0202)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1490
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076820Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0186626_10101931F076820GAGLISRWYDLKKVGKIKDGFKKRVVPPEKRFADLSELNHASIRAYALEVLGCVAAEEDDEFTKDFCEAKDEGEKNLFPAYNLHEMLFGNAYAFPGLTLVADDNPAQQLLDMSVRLQEQMPKASEIEDDIKAQEASAAKAEKFADDDEVIETATTKLKFSPALVIQSEEFLKKWCPARPANTHHIVRILPTVQEFLAIKDLPVDERWQMLALSGAGSFDPKLDSDPSNPVYTQWVHESMTRNKLACVTAGKEFTWGANVPASTVVVTKSFAETTSVAGMLQYVGRAARRGLTTHGQAIFERDEDLLRIFQSPDGLSTEARTMERYASWWLSRGEKW
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