NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186436_1007780

Scaffold Ga0186436_1007780


Overview

Basic Information
Taxon OID3300017489 Open in IMG/M
Scaffold IDGa0186436_1007780 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 318 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1032)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1781
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.8Long. (o)-97.13Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062433Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0186436_10077802F062433N/AGSSLGRLVARIAGSLREREADARRREAEAKETEKLLARAEGELQQLISVVSQLHGLQQCSGETLPGTAHLGPERPRPCPKPPFFWQPSQEYADEFEVSGEHAEVVTKTKDFEDQGWVIPVGGAWRLVRGGLYRWTIRIERKCPSRPQLQLGIHGANHGQPWRLITTSRCSWSRDDEPWRDRPGGDRLIDEGDFVHLEADLRGDGSRCGSLALAINDEPFEVFFEDIPLATPYPLMPVVSMGGGESRVRLCPSY
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