NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1001343

Scaffold Ga0181391_1001343


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1001343 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7264
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F008022Metagenome340Y
F022645Metagenome213Y
F072518Metagenome / Metatranscriptome121Y
F098055Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100134311F098055N/AMRSACDEETPHCPWCERPMTIIEHEFCEICDECREENELN
Ga0181391_10013433F022645N/AMKNTNEIEKQLQHKADNYIEQKAKEMFEIHREIAQYLGGRLPNYIDYITDYSEYSNDLHANRGKYFTSSSPSAMQLKYRQDLAKNYKEKLVAKYTRELIMKLDIFE
Ga0181391_10013434F004523GGAMSTEIKSAREANTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPIRFATYTTGYVRNVTEGLASSYQINKTKKVSTRTSGYAYDTVERILIHSWEERIIYLAKFIIKNYYRKPTYMMSDYVMKCLREAYVRDYNNQPSNRQPFGDEVSFDEGDMHSPDIKVIINGHRYNLS
Ga0181391_10013436F072518N/AMTKLRVRYKNERTLKQLLSHAEEQHNHYKEYGFVGDMKYWQAKVHDYKAQLYALYHEREEFDKLNTI
Ga0181391_10013437F008022N/AMTTTELQVKIEALQAALETKTQEQNAYRGQIDTLKKQLADLNKPKLTMLQFDELTELVEQGIGEFDFDDLDNYSIDYGIDYDNRVTCESFCFDNADELARVICETVYKMFAEANEDDNQLNQD
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