NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187806_1136923

Scaffold Ga0187806_1136923


Overview

Basic Information
Taxon OID3300017928 Open in IMG/M
Scaffold IDGa0187806_1136923 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033528Metagenome / Metatranscriptome177Y
F069259Metagenome / Metatranscriptome124Y
F106008Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187806_11369231F069259N/ADLKTADEWVDKTMAAKRAKVEKQAAAPGGISLDQPK
Ga0187806_11369232F033528N/AMYVLTLNPGESAFVRCTLCENLNLMVTNEKESDVKLQFNTKDDQLDAECVKCKGHYFWTPGSVAIVKPTEHSN
Ga0187806_11369233F106008GGAGMKWKIDRIISVATLAASLIAIFLVLKKPQPVAPVQSPAAAA

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