NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187877_1038336

Scaffold Ga0187877_1038336


Overview

Basic Information
Taxon OID3300017931 Open in IMG/M
Scaffold IDGa0187877_1038336 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2299
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F056263Metagenome137N
F085038Metagenome111N
F100248Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0187877_10383362F085038GGAGGMKLILGFLLFVATVAITGGLYLIIRKEDDKKCDLQRLHSLPSQIARRVQSLGDYLFSLFCSKPEATTSIRQPE
Ga0187877_10383363F100248GGAMTKLSILAILSLAFIGVTRLAQFVLSLFVIVFFGFTTFELIRTFRQPAKRQYAA
Ga0187877_10383364F009261AGGAGMILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAAKKHTMSVLKGVA
Ga0187877_10383365F005296AGGAMPIWLLWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQALVARWITTSLRWLANTRAMEYAILLGLKRVWPKGQTICTEVKLCL
Ga0187877_10383367F056263AGGAGMAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQDALENALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVNRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNAGHNWVMHLFAHVIH
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