NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187877_1086477

Scaffold Ga0187877_1086477


Overview

Basic Information
Taxon OID3300017931 Open in IMG/M
Scaffold IDGa0187877_1086477 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1333
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011543Metagenome / Metatranscriptome290Y
F059472Metagenome / Metatranscriptome134Y
F073775Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187877_10864772F059472GGAGMTHPILNRILMLDQVADERSREHQRRSTSAAAIIGVLIAFGILEYQLLVEHRVPWDLIAVIYAMGLTKIALVRWYSFKN
Ga0187877_10864773F011543AGGAMFAFDSFNPKKSLPVLIALLLVAQVDLACAFGWPQSLLSLVHLTAASDDLCRGVCAGIGTSIDVLVVFQLARIYAKRAMRSGDEPAHD
Ga0187877_10864774F073775AGGAGMHALYRRLDSKHRRLLQLANFSLVLGLTPWIFRESITLNHNWLDAFCGFFLGLSVTINLFCLRAARRCRPDGI
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