NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10001300

Scaffold Ga0187847_10001300


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10001300 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22908
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F048483Metagenome148Y
F061167Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_1000130010F006278GAGGMFRAEIQWLASGPTLTLEGKLVADWAKQARCLFTEDVLPKGLIVDLTDVSYIDSVGEELLKWLASVGALFVADSVYANAVCDRLRLSPMEKISEHRKRGYRNNEERSSIRHFHPVEAI
Ga0187847_1000130012F004823AGGAGMYATKTVNGVPAIQRDGQSVLSVCDRDLDFANWLCALLNELGHKSELLLNEQGCEWFDANDRGFRRAVHHA
Ga0187847_1000130020F061167GAGGMWATASSGADTLAMMRGQIFNALVMDSGQDRLDIQNFTAKAQGLQPSLAVFLVDEWGDELVTGLEELGHELTMLEECAMLAVEPDSCLSIARS
Ga0187847_1000130022F048483AGGAGMYSPMLTVQAAPTSASIVQGAYRDICSPVHEKDEAKLNPLHMNWILVYDTKANPQTQMRWVVDR
Ga0187847_100013009F001596AGGAGLVSSTAAVDARNYASPAEIVACFQDQRNVLGRLAFLIIGEQATAEQAVVHACEMTLQRNSPFRDWLFKWAKAATIAGAISHRTEVIRICEAAYKDRRCPHAEHLSQGDAEERAVSLDLILKTDTHILIAELDPLCRAILVLRVAMRSSIQDCALRLNVSRPAVLAANCHALMWLQHVKTVEENHDVSHAV
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