NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10067228

Scaffold Ga0181584_10067228


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10067228 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2497
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012734Metagenome / Metatranscriptome278Y
F061903Metagenome / Metatranscriptome131Y
F102574Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_100672281F061903N/AMNKGDRDMKIKNFRVAVSDYGDVTSTLYTKESAAKLAEQLKTVAPTLEDAKYFVNIAQWDLRDHWGVDGYGDPLCTRISGVENTENLEGLFIFMKGGWHYSDDGIGWDPVDEAFLEAA
Ga0181584_100672284F102574GGAGMINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSEHEED
Ga0181584_100672285F012734AGGAGMKKIKDIAYGYYWNCATCGTENAYGLTEQEADDYIKEWEEDNADAVAEGETGEGACDWWYNVTAEENDAHIEDKETCWKCDTVAHKSTRTDKAKWFDSIVDNLQKST
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