NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181607_10019601

Scaffold Ga0181607_10019601


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10019601 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5137
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009440Metagenome318Y
F033949Metagenome176Y
F065802Metagenome / Metatranscriptome127N
F084262Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181607_1001960110F033949N/AMNNTKVKWHNEDYDLQCDVSKLEELGFQNSSWKDDIAPSFANDKMQIYFFNRNKFKEHEGCSKFSINKILDDETIEHLYSTDYFYKVLQLAQLSNEINKNQ
Ga0181607_100196013F084262GAGMYIIDYPNQKIKKFSNQELESFLNKIIKKRWIFVKDKVKAKKFLRQIIKN
Ga0181607_100196016F065802GAGMMIILGKTPKEWRKEIGSKSLYYRTEIVIFLIGFILGSIIF
Ga0181607_100196017F009440N/AMSLLNRKDHKMKAKDYKSITEILTKKYQCKFYSFMDLKDCENRIKQKRKDRQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.