NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190266_10427825

Scaffold Ga0190266_10427825


Overview

Basic Information
Taxon OID3300017965 Open in IMG/M
Scaffold IDGa0190266_10427825 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9013Long. (o)-109.5337Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074520Metagenome / Metatranscriptome119Y
F080012Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0190266_104278251F080012N/AMPASHPVLPDDRKHREIATRHASRQRSVSDEWTLVEFRPARWLLTALTILALWLVSPTLGKRGLVGLAWQFAPRRLRLIAGGVAALALVVL
Ga0190266_104278252F074520AGGAGGMNTARPRRDPGRGYAYGGPAFIGGILVGVGLGMLLDDFFAWFLIGIGAGLILMGFVAALG

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