NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187891_1008446

Scaffold Ga0187891_1008446


Overview

Basic Information
Taxon OID3300017996 Open in IMG/M
Scaffold IDGa0187891_1008446 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5771
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011543Metagenome / Metatranscriptome290Y
F059472Metagenome / Metatranscriptome134Y
F073775Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187891_10084463F059472GGAGMTHPILSRILILDQVADERSREHQRRSTSAAAIIGTLIAFVMLEYHLLVEHRVPWDLIAVIYAMGATKIALMCWYRFKN
Ga0187891_10084464F011543AGGAMFTLDTFNLKKSLPFLVALLLVAQIDLACAFGWPQTLLSLLNLTAAHDDLCRGVCAGLGTSIDVLVIFQFARISAKRAMQHRSDPEHG
Ga0187891_10084465F073775AGGAGMHPLHRHLDSKRRRLFQIANLSLVLGLVPWIFRDSIHVNHNWFDAFCGFFMGLSITINLFCLRSARHCREEQT
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