NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184604_10106365

Scaffold Ga0184604_10106365


Overview

Basic Information
Taxon OID3300018000 Open in IMG/M
Scaffold IDGa0184604_10106365 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)876
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016212Metagenome249Y
F082319Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0184604_101063651F016212N/AANHKGWGVALQDFPISPNPARPLEGVVYGFEVAADNLDDVVRAAQERKLRVDGPVEYAAPCPIKQSLFVLDPDGNTLELSIRRDPVSDKPQGKVVPLRRISHVRIEVTDLAQGINWYRDTFGLVEAAQVPDDEQVTLTVPNTGQLVILHKVDQVAERSTRSVKGPHVDFRIAPELYPPILEKFNRKEYYWGPDPTKIPWHEQGGHTVYGYDPFGNRIQIGHRFGHQ
Ga0184604_101063652F082319GGAGMIPQLSLQERDRRYQIVRAEMAKRGIDVLILPANTGRWEQLQG
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