NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187875_10037646

Scaffold Ga0187875_10037646


Overview

Basic Information
Taxon OID3300018035 Open in IMG/M
Scaffold IDGa0187875_10037646 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2867
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F025900Metagenome199N
F056263Metagenome137N
F066360Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0187875_100376462F025900AGGAGVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAADTIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGMYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEALAEQVNTDPFPDGEFGKEAA
Ga0187875_100376463F056263AGGAGMAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTHVIH
Ga0187875_100376465F005296AGGAMPVWLLWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQALVARWITTSLRWLANTRAMEYAILLGLKRVWPKGQTICTEVKLCL
Ga0187875_100376466F066360AGGAGMILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETVNFGIHGITNPNSVMFALGNTI
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