NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181606_10201384

Scaffold Ga0181606_10201384


Overview

Basic Information
Taxon OID3300018048 Open in IMG/M
Scaffold IDGa0181606_10201384 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063610Metagenome / Metatranscriptome129Y
F097254Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181606_102013841F097254N/AGRNVEMTEQDVTAYEELLPAIERGSLNRHQSRDMYAIFNRTFNANERPCNCTGKNKSMVEKLQRAYEYTCKP
Ga0181606_102013843F063610GAGGMTKREILFTKIHERDGKRYKATTWDCTPPGHEETYTLRRTEWELLPQPANQMELF

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