NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188880_1000027

Scaffold Ga0188880_1000027


Overview

Basic Information
Taxon OID3300018640 Open in IMG/M
Scaffold IDGa0188880_1000027 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS859_ls5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8794
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003009Metagenome / Metatranscriptome513Y
F060948Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0188880_10000278F060948N/AMVFQVVVFAGLVLCCTHLSEITLTIAANIMHTFFMFFGKFYWWVFTDKQLNTDTIIRLAYAHYVAAFYLFYISLIHGVDLHYD
Ga0188880_10000279F003009AGGAMKFSVVNLIRYFTIISVSFHDLNALFGFMIFLTIASQLVSGTMLSFSLVPESMLIPVVRDEEDLEDLYADDFF

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