NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197907_10727879

Scaffold Ga0197907_10727879


Overview

Basic Information
Taxon OID3300020069 Open in IMG/M
Scaffold IDGa0197907_10727879 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2599
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F037883Metagenome / Metatranscriptome167Y
F061313Metagenome / Metatranscriptome132Y
F070583Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0197907_107278792F037883AGGAGMSNQNEPNRVLLRMGARLLTEEEVESVSAAGPPCQLTFTHLPKGGSDEDTFCP
Ga0197907_107278793F011259AGGAGMSRQEENRVLARSGARELTMDEIDQVSAAIQNHTNVCTAAMPFATVTGSGDGDGCSDTDKDSSFI
Ga0197907_107278794F070583AGGAGMNDQNRVLIRKGARELDREETGRVGGSLGTLTACTWDPDFGKDGDTSIGDC
Ga0197907_107278796F011803AGGAGMNSQNRVLIRRGARELTPAESEIVNGGFITLSLCTSSPSPDGDQHVGEVGC
Ga0197907_107278797F061313AGGAGMNDQNRVLIRRGARDLTEQEVEQVCGGLRTATKCSVTAAGAIDGDLHECS
Ga0197907_107278799F023966AGGAGGMDNDNRVLTRRGARELSEQEVETVTGAFKVNHTLTPCFIDKKKQLLNGDQAIGECGP
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