NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211648_1010331

Scaffold Ga0211648_1010331


Overview

Basic Information
Taxon OID3300020267 Open in IMG/M
Scaffold IDGa0211648_1010331 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2215
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044224Metagenome / Metatranscriptome155Y
F046313Metagenome / Metatranscriptome151N
F059352Metagenome / Metatranscriptome134Y
F086365Metagenome / Metatranscriptome111Y
F097153Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211648_10103311F059352N/AMKRHIQDWQIRGGFNMDQWRLEVKEKNSWRVEAESDSTVELLKIARGLTE
Ga0211648_10103312F046313N/AMKTQNKSIIVKDKLYQLRRTIDDLVEIGPDYAYFMNAQIAHKNLKKIKNLLEYIG
Ga0211648_10103314F044224N/AMKLNKIIQSYKNSNMNKELLSHKLKRYYNLTEFERIIVKNNV
Ga0211648_10103317F086365N/AMKFTKNELNLMRYAMYDLLNGDDVPNDKDKFEIHVNEIINKIDNELNR
Ga0211648_10103319F097153AGGMKKNEVVVKSNGLRNELKEIRKSIDKLTNALIEIHIAQTNQHEINRKYCTCSSD
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