NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211667_1000016

Scaffold Ga0211667_1000016


Overview

Basic Information
Taxon OID3300020282 Open in IMG/M
Scaffold IDGa0211667_1000016 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64289
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (14.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044224Metagenome / Metatranscriptome155Y
F046070Metagenome / Metatranscriptome152N
F048244Metagenome / Metatranscriptome148Y
F048320Metagenome148N
F090610Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211667_100001625F048320N/AMKQLLATVLLILSYSCASIKGQAYIDINENIDYERNEDLRYRTRFKVGYKIYLGDKHTIK
Ga0211667_100001637F044224N/AMKLNKIIESYKNTNMNKELLSYKLKRYYNLSENERLIIKHSI
Ga0211667_100001640F048244N/AMKSLKDILYQIKMKMNLEDKNMKVELTEREIDRLYFDLKDYVKTLYYVDKLSELSESDKEECKIELNLIEKFSKL
Ga0211667_100001644F090610AGAAGMHKVWRLYLIDNKSITEISKELNITKSKLKLKYGLK
Ga0211667_100001645F046070N/AMNLKRIKELRNVVHDAQTKMDLISKRIMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE
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