NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211647_10090092

Scaffold Ga0211647_10090092


Overview

Basic Information
Taxon OID3300020377 Open in IMG/M
Scaffold IDGa0211647_10090092 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061903Metagenome / Metatranscriptome131Y
F102574Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211647_100900921F102574GGAGMLNRLLNKLTHYFLSRAYAQMQVAQQQNVVSYNEDKVADFCDDYYTNFVEENN
Ga0211647_100900924F061903N/AYVTFLTLGVGNGQYIDVTIKKAFAYSDYDVTSTLYTKESGAELAEQLKTVAPTLKDAKYFVNLAQWDLKDHWGVDGYGDPLCTRISGVENTENLEGLFIHMKGCWHYSDDGIYWEPVDEYFLEKVA

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