NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211618_10074685

Scaffold Ga0211618_10074685


Overview

Basic Information
Taxon OID3300020393 Open in IMG/M
Scaffold IDGa0211618_10074685 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1250
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058913Metagenome134Y
F080142Metagenome115Y
F092069Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211618_100746852F080142GAGGMKVGAGEFIKTDSGEVIWGSEAFIDEVFKALYGNEYEYEIWSYNDALQKIKTLVQLQEDN
Ga0211618_100746853F058913AGGAGGMKLTKDEARFLDDKWNDFFYYFQVEEMYEKDQELYRSIGKKLSEVKQXK
Ga0211618_100746855F092069AGGAGGMTTVIFEYNGKSKEIPIDEIKSVKNVADAYEKLGLISKIPVKRRLYYYLPNGKYHSFLSNKNHKYAVCCTEKDTKTGGHYTDDYAKAKDKAENLNRKMNNPEYGYRKWVVVDIKGGK
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