NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211472_10043787

Scaffold Ga0211472_10043787


Overview

Basic Information
Taxon OID3300020409 Open in IMG/M
Scaffold IDGa0211472_10043787 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_031
CoordinatesLat. (o)34.835Long. (o)34.8033Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058913Metagenome134Y
F080142Metagenome115Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211472_100437871F089953N/AIHEGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDAEKALYEIVQKRFEEQSQ
Ga0211472_100437875F058913AGGAGGMKLNKEEVKFLLDKWNDFYYYFDVESMYQKDQEIFRKIGQKLSEVKQ
Ga0211472_100437877F080142AGGAGGMKVGAGEFIKKDSGEVIWGSEAFIDEVFKALYGNEYEYEIWSYNDALQKIKNLVQLAEDN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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