NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211574_10005848

Scaffold Ga0211574_10005848


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10005848 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6161
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093974Metagenome / Metatranscriptome106N
F102574Metagenome / Metatranscriptome101Y
F103052Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211574_1000584813F093974AGGAGGMVPYTMKFCGTCQESTEHFDDRQYAEDKEQWNCIQCFDREESTDALDGAVSFSDLDDDEGMIYDEW
Ga0211574_100058483F102574N/AMLNKILNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ
Ga0211574_100058485F103052AGGAMQNLQHTFKLAGDGYWGAEKGRTVTITGYNIERYTQAEIDDDVDWAVAGDIRHVSVQHTSTWDVYTDSAFVHAARTVTGIADLDFTEQGMQDDNNASMEV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.