Basic Information | |
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Taxon OID | 3300020579 Open in IMG/M |
Scaffold ID | Ga0210407_10000030 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 209274 |
Total Scaffold Genes | 179 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 157 (87.71%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002142 | Metagenome / Metatranscriptome | 590 | Y |
F007192 | Metagenome / Metatranscriptome | 356 | Y |
F021344 | Metagenome / Metatranscriptome | 219 | Y |
F077419 | Metagenome / Metatranscriptome | 117 | Y |
F083552 | Metagenome / Metatranscriptome | 112 | Y |
F103954 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210407_10000030108 | F007192 | AGGA | MLRNPIRRTIAGLLALAFATSLVARGQFWDFLGRTQVDRSQDHGRIQITRRDLHFRTIQLRVSGETIFFDRLVVHFDGGTSQELMVSDRISPGGRNYVIDLLGERCLETVELWYYKEPWDHNPTVSVYGTNLPDSATQALVREH |
Ga0210407_10000030156 | F077419 | AGGAGG | MQKMVGDDQKVSDAELMTLLRRTQEEIDAHSEMNEVNLLLRDFARELLKKRLLIRVQFALMMEVGQPGQSTRT |
Ga0210407_10000030162 | F103954 | GGGGG | MESAFELWTGQAVVVLLTVGRIRLSLLGTLLKDQSETLLVKLEAGPEVEIPKTYVLAIEEPRPAGPKGQCPL |
Ga0210407_10000030170 | F083552 | N/A | VGAKAEIDFLVEEGQIRTKAVVRHVEGASGMGLEFTAAAQEDRPRLGGLLTRLRSLSRPVERNNR |
Ga0210407_10000030173 | F002142 | AGGAG | MKMSLTLLAALFLSATVATAGPKPQSGSVLSHTSVACGTKKSKKQDIDLLCQQYVIRSGTTDYTIRQPKPSEQTIIPLNTAIEFKLDKNRMKFKVDGKSFEFMVISQDAASSLAAAPATSTPNHQ |
Ga0210407_1000003034 | F021344 | GAG | MVKRKKIRLEKGTEARRRARKSGLAPAGTRVIPDKRRKPEKHKLDMLQEVD |
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