NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210399_10048169

Scaffold Ga0210399_10048169


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10048169 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F017708Metagenome239Y
F046588Metagenome / Metatranscriptome151Y
F105941Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_100481693F105941GGAGGMWKITTRGFTLQEVLIMAATNIASALIATDKSERTTTPRTEIQQATGDCHGQGD
Ga0210399_100481694F017708AGGAGMAKVIEFYIPKNFRKPLRAVAQPQLGKIIEFCPQRKEI
Ga0210399_100481695F046588GAGGMTFIPTQTGFMRLEDSERLLQAVFPNYPSLEPCHSAPALEPISQASEEHLNEVRMSLC
Ga0210399_100481698F001596AGGAGMSWFHSSTAPVDARSHASPAEIVACFQDQRNVLGRLAFLITGDQATADQAVVQACEITLQGNSPFRNWLLEWAKTATIARAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLDLILGTDAKTLIEKLDSLCRAVLVLRVAIRSSIQDCALRLNVPRSAVLGANCHAMTWLHDDHGTAVEENRDVSYAV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.