Scaffold Ga0215015_10101283

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0215015_10101283

Scaffold Ga0215015_10101283

Overview

Basic Information
Taxon OID	3300021046 Open in IMG/M
Scaffold ID	Ga0215015_10101283 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2561
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location Name	Huntingdon County, Pennsylvania, United States
Coordinates	Lat. (^o)	40.6949	Long. (^o)	-77.9199	Alt. (m)		Depth (m)	.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009518	Metagenome / Metatranscriptome	316	Y
F042275	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_101012832	F042275	AGGAGG	MRTATTLTLPEPAYLRYLRVLGAWWCLGSSAVGPRVLMAYVVRS
Ga0215015_101012833	F009518	N/A	MTRRVLHTAAAVGLTTLLVVVLGAAVAPGAASLTARALVVSDQARRYLTLAYGSLPTEFLGCMIGQVRGPVVYVQRIAPADVDPAHDTRTHVVPRQTCEAAGWQGTVGMIHSHPGGERCFYYFPGTQVASSDAAAFAQQPYPVDAIMCGDSIVWISRDQTQRHVRLAAGPLPVAADQPPGNRVHAGSRLAGRGE

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