NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194133_10470367

Scaffold Ga0194133_10470367


Overview

Basic Information
Taxon OID3300021091 Open in IMG/M
Scaffold IDGa0194133_10470367 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002721Metagenome / Metatranscriptome534Y
F074773Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0194133_104703671F002721N/AMAKDARLELGRYISNPFNKKGDIVKKLDFNDLFRSKPDTGEYPWNPSRFTEQDLLKRAMTKKLIENPDLQFVSNAPFFDNNEAVTPEYEVFEGIGRFNRPVAYDFETGRPITSQRPEEQPDFNTGWIEAYKISPTIPPGKSVKNPMPRLRNPDPNGYMMKAAEIRVEDEIENK
Ga0194133_104703672F074773N/AKGITSAQLQENVLSNPEKYDEKTVKQARLRKTLVGLKKKKNKNNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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