NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10000075

Scaffold Ga0210406_10000075


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10000075 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)154083
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (84.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007091Metagenome / Metatranscriptome358Y
F038763Metagenome / Metatranscriptome165Y
F067060Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_10000075107F067060N/AMKTPQQQSSRCHHAVYRFIRVAVFFAFVGLLFGSSKGPFAIPPPQEPQGEIIGTVEGQAIAVKGPMSVQVVGNQVKTLLRSGVDIRVKSGRARITLSDGSTIAVCGPAHISMLKSGNALTIALDTGSIHARVAGNLTLNVFTAQILAKTVAIGDGPQDFLVGFDTPGLMCVRAGLGALHLEEQFGGQSVMVPQGGDITLANGQLQNIHNNSGLCACEASDPASSPAGTTGPEISALASSEEVRRDSTPRKPAAQTAANPRAPDLPKGPAVEPTYQVFMPPLRYDASAKVQDEPDPKLIVLVRRVRVRPTLIFQSRVQGDPLPSAQTALSAEKSKQQPVASKPSAAANSSVVDRVKTFFKSLWTPSS
Ga0210406_1000007512F007091GGAMLLTPDKSLRLSIEIIFVLLGGLVIWLGATNHIFFDRRRIGWLLLSIALILWGARALYQPGKYWSRKENLTRGLSLLLLGVVMLAISRVPFLWVGPLLSVAGLLLLLRGLAGSVLVFRRN
Ga0210406_1000007587F038763GAGGMCPFCLASMGLIVASATSAGGLTALAVKLSRKKSNAKEIPNPNERSNQDVNPNSQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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