NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10166230

Scaffold Ga0210405_10166230


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10166230 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1747
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024634Metagenome / Metatranscriptome205N
F054248Metagenome / Metatranscriptome140N
F081787Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_101662301F081787N/ARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0210405_101662302F054248GGAGGMEIYKGREIETEQLNDGKWIVCAQDNKGVMVVARPGWHYLTEEDGIEDVERLIDQSL
Ga0210405_101662303F024634AGGAGLHKKARILRLSKKCGIFAGLHAILAEHPMNDRYTRVTAPAGFDGHTTRRDYYFKTKNGAREFRLRIKRWKAEQKSPTDTLSFDDSDKRWLAYLKAHVGNLELLRAIVTHWERTAKPITGPPKVEELCKAFVLYRQSKGLDKATLSEDRYISKRLQKHLGGYMVHELGIAEIRSFPA
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