NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000001

Scaffold Ga0210396_10000001


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1082745
Total Scaffold Genes1062 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)680 (64.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005789Metagenome / Metatranscriptome390Y
F032367Metagenome / Metatranscriptome180Y
F067937Metagenome / Metatranscriptome125Y
F089568Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000001476F089568N/AMSEEQPFKGGERDEPTMVPPKGPNVISTLDTPPRPDAVKAHDAAIRKHLQDRRAQQDPPA
Ga0210396_10000001709F005789GGAMATVVTLDASPSSVLRSMRGTIVAARIAYPGVLHVEVRDSHGELWRLATQDAEWSPSDPSQLTERSIEDADIDENSGELRCRLSDGSMLDVKPMGFEKEDDPPCWELITPAGVVLEFGPGVRWQISSADALASSRR
Ga0210396_10000001710F032367GGAGMTRKRDIKQFRQACREAGLSAIERYEASQELHADKESSGAQEHMSYGELLAWLQEWKESWQRS
Ga0210396_10000001846F067937N/AMETDTGASTDEQDWRMQAELEVPDAGGALRELVGRLRGPDVVKEVETAVPHDVVITHDGKLLFAYAADEATLAAARGAIEGVLAREGIAASVRVSHWDDEAEKWRQTDPPLSVEELQGEANAERDANAIETRTLVVSSGKMIRAEFEQSLREWADKLGLQCSIVEHPHLLTTQVAFTVSGPKHKIDEFARGLRAEERRTIRTETAVMASPL
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Institute for Fundamental Biomedical Research
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