Scaffold Ga0213873

Basic Information
Taxon OID	3300021358 Open in IMG/M
Scaffold ID	Ga0213873_10000003 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	973849
Total Scaffold Genes	868 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	497 (57.26%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

973849

Total Scaffold Genes

868 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

497 (57.26%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brazil: Minas Gerais

Coordinates

Lat. (^o)

-19.2822

Long. (^o)

-43.5936

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F002818	Metagenome	528	Y
F024882	Metagenome / Metatranscriptome	204	Y
F026702	Metagenome / Metatranscriptome	197	Y
F043603	Metagenome	156	Y
F048553	Metagenome	148	Y
F065095	Metagenome / Metatranscriptome	128	Y
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213873_10000003126	F105755	GAG	VRFVRLAIVATALVLLPRCTVSVSRYAFETALKNQANIDRIHIGQTLAEVEKIMGKPPERRNARVRFDGISIEEWSYLTDYVRRMDTTITFVGGKVDEIHAAGWEEE
Ga0213873_10000003391	F043603	AGGGGG	MNNAAQTRTNKLETAVSAAYALPAMLAANTVALLALDQLGGIPHWIKTAVSLFLSF
Ga0213873_10000003434	F065095	AGGAG	MAVMDEKASIEHEIARARNDFGNRIDELDRTLRTNYDPGTLARQYAPQIVAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVGMTIKNVRERKDAEEARTMVGLA
Ga0213873_10000003437	F026702	GGAG	MNFDVATITYPDGRIAKLTPAEFAAIPLGQRIELLTASRIKFEKDKQPMSPLLALKRQ
Ga0213873_1000000346	F024882	GGCGG	MRMACDHKGGPELIEMAEAHLRREGIPASQWPGLRFRWSENLDGGMWAAVIVEIERRGEQWIVTRLDRKQEPVDNAGFAAL
Ga0213873_10000003519	F048553	AGG	MMRFTIEERHLTDDHGRPVAAREAVEFHTCDAETIDDAVRVFVKEDNAEIIGSVLKFPGFQAVATVRKESGVYTLQFTPASSSGMRI
Ga0213873_10000003707	F001750	N/A	MPKVTADIPSELSRQIDRIIRDGWYPDAETVVREALHQFVDAKSFLGDSPRMLHRFAADALNDSKPEVALKFVTRAVSLLANQSVTDFTLYQALVELRVQILLVLGREDDALVSLEEAREKLPNNPTVARWISRLEKNKPRGEA
Ga0213873_10000003754	F002818	N/A	MPTEVEQSRELARAFWAGKPIACPRHPGATLTGSFVQTTFADHIFLTCSRGKETLTIPQRPKQMEFYDQQVEGFVENLQRGDAILCYRCQAKMETAAKENPETGVTDYTFTCTRCFSWGRWVGKPELAKIGKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213873_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences