NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213882_10017871

Scaffold Ga0213882_10017871


Overview

Basic Information
Taxon OID3300021362 Open in IMG/M
Scaffold IDGa0213882_10017871 Open in IMG/M
Source Dataset NameBarbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2655
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030682Metagenome / Metatranscriptome184Y
F061687Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0213882_100178711F030682N/AHAVSFGGVGTRAAFYKAGQGQMVRLVAALVALLAALIVPGIGAGAEDLPAYDSRVSVALDQLDAVPATSDLRGVLATNQVEVRFVPMGAGIYARYSVLKHTIEIDERWSDADETTLAAVIAHEATHASDAVSGYLATGGEPACIDSEVRAFRTSALFWLAQYGAAGKVDASSELDQQLNSIADRELHDPQGLEGLVRQTYSQQCSH
Ga0213882_100178714F061687GGAGMKPPLWLCAWCGGAAEDEQSLRDHQEWCLRDARLNTELLDEVMLRTGEITQDALVAAARKRRGHAAKRRS
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