NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10008143

Scaffold Ga0213863_10008143


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10008143 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6681
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030152Metagenome186Y
F051967Metagenome143N
F103096Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000814312F030152AGGAGMKITKAAIQALATQSVKAQYARETDKALYLEEIIVLAGFDISLTDRPDQWDRCIEWLENAIAARWTAARYLV
Ga0213863_1000814314F051967AGGAGMLPRTAQAHTPLRTSKSRRTWCGPYAAAVFLRQNYDAAYDACLQFTYRGKITGMSNSLMKVVMGANNVEMTFHYKREIGSYARDNATLAAWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKAPH
Ga0213863_100081432F103096GGAGVKTQDEMMDIVNALYLTLPDEIEQEEMACIFTVLLGMFGLNLEWDKIKDRVSNNVADNISADLDADEIGVPIMSQEKILEAQKDADDFLGKIVK
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