NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000483

Scaffold Ga0213869_10000483


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000483 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32815
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (87.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024775Metagenome204Y
F036681Metagenome / Metatranscriptome169N
F103301Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000048314F103301AGGAGLKIPKLRIFDRQKVKESLTDELTPYEIKNLNQSRKAFTNKEISYIEKNKPYLLASNQKEDIREIINSGFPLMSKEFSIELLSRRFAFYQTMFIGKNVDTAQDLRVRSLRTRDCLMNGLYFDTLKPIKE
Ga0213869_1000048328F024775AGGAGGMIDFEITDNGETKYLTWAKLCEFAGAKLYQPSTPELASIKMQLAKQWDLEPDNVVVRMNQQPIL
Ga0213869_1000048349F036681GAGVIHVFVLIMTIGGLEVANDNCSEAMCFRSVDTCNSFAAKLRRRGSPSTLVITTYCKPILINPNEDGIKVY
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