Scaffold Ga0226655_10136286

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226655_10136286

Scaffold Ga0226655_10136286

Overview

Basic Information
Taxon OID	3300021561 Open in IMG/M
Scaffold ID	Ga0226655_10136286 Open in IMG/M
Source Dataset Name	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1031
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	University of Toronto, Toronto, Ontario, Canada
Coordinates	Lat. (^o)	43.5479	Long. (^o)	-79.6609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072819	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226655_101362862	F072819	GGA	MCHGIGVCIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVKELIYFCRNNLNDLTVQCFTHKRFMSVQAFIDALRLVYQELGVEGATGNVSDFVLFVAGEHRDNVYASHVCAITDEHRQVFAVRLGMDIEEIEANLSKLTWRIDGGI

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