Scaffold Ga0063145_1093250

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063145_1093250

Scaffold Ga0063145_1093250

Overview

Basic Information
Taxon OID	3300021930 Open in IMG/M
Scaffold ID	Ga0063145_1093250 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S29 C1 B24 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	506
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	60.680077	Long. (^o)	-19.33984	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002870	Metagenome / Metatranscriptome	524	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063145_10932501	F002870	N/A	FTQLTLAALAGANASQSAMQSVISAYNMAEAGTELHAHLGAALDVMGVAKGADARSQTVSVPIDEKRALTVKVSPTYALDDINSVTLKSFRKIVGYDTFESIRRKNRNESKDTSDYYNVTVSMMVRRKPAEVASAPARDPYNPDGAAALASTLDKGFPYDD

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