NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10002754

Scaffold Ga0222717_10002754


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10002754 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13425
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030152Metagenome186Y
F051967Metagenome143N
F103096Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000275415F103096GGAGMKTPSEMMDIVNALYLTLPDEIEQEEMACIFTVLLGMFGLNLEWHKIKDRVSNNVADNISADLDADEIGVPIMSQKTILKAQKDADDFLGKIVK
Ga0222717_100027545F051967AGGAGMLPRTAQSHTPLRTSKSRHTWCGPYAVAVFLRQNYDAAYDACLQFTYRGKITGMSNSLMKVVMGANNVEMTFHYKREIGSYARDNATLAAWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKAPH
Ga0222717_100027546F030152N/AMKITKAAIQALATQSVKDQYALETDKVIYLETVIDDGGFDISLTDRPDQWDRCIEWLENAIAARWTAARYLV
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