NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212021_1007310

Scaffold Ga0212021_1007310


Overview

Basic Information
Taxon OID3300022068 Open in IMG/M
Scaffold IDGa0212021_1007310 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1765
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F020115Metagenome / Metatranscriptome226Y
F084107Metagenome112Y
F092884Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212021_10073103F020115N/AMTYEQMQRFRDWAERVANTANDTDTNIRPADIMHDIFGIMLDQEHFLPRLXQRRN
Ga0212021_10073104F092884N/AMTKKELIGLMAGYPDDASVVIEVHDTSLHEDLYDFTFDAISWNRFDNTTSNPMDAFDYKEMHELRLTAINHNEKX
Ga0212021_10073105F084107N/AMITEDLNLQDLTLQISNVFNDTGAYTDLSKLLFVSNILGKDEVAELIDRLEAFVTQEIQEIIDERXL
Ga0212021_10073106F009699N/AMIVDKQAKAFMQKVDSSAPFWQELRDPNRPVVNMGGEEAVPRFLYNLMITKRDVNLYLKGIKPHRGWRIGDVKAYFGLTGGKQKIADAINLLHSEFFDEFREQGYIRPRETL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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