NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222625_1218559

Scaffold Ga0222625_1218559


Overview

Basic Information
Taxon OID3300022195 Open in IMG/M
Scaffold IDGa0222625_1218559 Open in IMG/M
Source Dataset NameMetatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)938
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048201Metagenome / Metatranscriptome148Y
F102747Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222625_12185591F048201GGAGGMAENSSSSVASVAIVVIILLGVFAFYFLFGRGVHAQRDINIDIKGPRHEVPIDKR
Ga0222625_12185592F102747AGGAGVRKAVSKNVPSRGAKIAEDYAKKVRVEPPKQTRQEDPRTKRIRAKAAGSHDHGPAQQNKNKKP

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