NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224513_10035294

Scaffold Ga0224513_10035294


Overview

Basic Information
Taxon OID3300022220 Open in IMG/M
Scaffold IDGa0224513_10035294 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009330Metagenome / Metatranscriptome319N
F097254Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0224513_100352943F097254N/AVKDCGCEERRAKLNAIFPGRNVEMSEQDVTAYEELLPSIEYSKKSGARLSRAQWRDIYGIFNRTFNANERPCNCTGKNKSMVEKLQRAYEYTCKP
Ga0224513_100352944F009330GGAMTLDGYLERNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKDETIAGLLERNQLKYWALRVMVNNYNSKTSRYHYKWRKDLERRRKFAHHIVDWWDGDGVAAHRDELLSHIEERLSDLPWFDAEVFAIYFEDGHTLDSFAESTGISRHTLYTTIRRVRKQLQGTRRQDRAVHEGDGDR
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