NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000033

Scaffold Ga0212123_10000033


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000033 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)453233
Total Scaffold Genes445 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)347 (77.98%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000534Metagenome / Metatranscriptome1044Y
F000595Metagenome / Metatranscriptome999Y
F001010Metagenome / Metatranscriptome807Y
F006810Metagenome / Metatranscriptome364Y
F008761Metagenome / Metatranscriptome328Y
F059304Metagenome / Metatranscriptome134Y
F094240Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000033150F059304N/AMAKLKFHKNKPYFSTLTGLYYSDYDKAFQDSLRNGGGAHVDFNLYYVNADRTSEIVF
Ga0212123_10000033198F001010GGAGMAVTVELQNTGDPEARAEIIATIEHVLSDRPGEWQVSIVGSRENDNWEMKIDGPKGYQRSYTLVGAEGEHEPRAIGQLLLKLA
Ga0212123_10000033301F000534AGGAMPQEISVSYQAIKSKVYRLIDSLVVGEKSESEVQDSIRRWWALIHPADRPIAQKYLLMVLGRSASALDSMGDAFLSVSSCEVAGPQMVDSQLAGRRLRVLERMVKENSVRTAV
Ga0212123_10000033326F000595AGGAGMNELTGLAAVIMIFGMPVALLGMYTFYRVRKLRTEERLAAMQRGVPVPMEPDLSEAAHSRRAGILLIAGAVGYMLAFTIIARVEPDALVAGAFGAIPFTLGLGYLLDSTLIRRDARAS
Ga0212123_10000033406F008761N/AMARRNDLRSLRNLIAEAHGLLVTTTLPEGRSQRAHELLAAALHLADDLLNQSPAAALGKKGGKETAKRGSEYFKKIAAMRKDFKGGRPSKSSKVN
Ga0212123_10000033442F006810GGAGMKRTLLCIILLVLPIALSAQTHRQQQGTIVRMRMTECLGPQHGFMATMSGDAKGETGQLCPEYVLVADKVVYVINGKSSEQLIPLAEETRFRLHKNEMLIRIDDAAKESRFRIKAMVLRPEWDRNQMLEEAESNAMATRHLDPSTIREQ
Ga0212123_10000033445F094240N/AMRRPVSGRDAVRSQVIDVLEAQIKRRPAMKKVSTRAAAQ
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