NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222622_10039602

Scaffold Ga0222622_10039602


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10039602 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2585
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079145Metagenome / Metatranscriptome116N
F079239Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0222622_100396023F079145GGAGGMTKGWSRSLCVLFAMIGANTSSRAQDAKVITYDEWSAIESAKGSCERALAWHKEKKGLIQQLGCDSVPACNEMMPMVMACTMADPAKGAQQFENKIVSEFFTNPSCKGITWAGHQGPTEAAKVSVTEAMLKPHWALSARLNLGNEKQYWQIVHNKTGTYAEGTNSSSEIVEKVCSLINRPSSLQP
Ga0222622_100396026F079239GGAMKAASPKRRRSPPKISALEKAAIGIMRKVSEATGGQPQQWESLDNQGMVAADAAGIAYAVERGWLIISGGFHSVSLTEAGRQRLK
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